miRBase entry: bma-let-7

Stem-loop bma-let-7

Accession

MI0013319

Description

Brugia malayi bma-let-7 precursor miRNA

Literature search

5 open access papers mention bma-let-7
(29 sentences)

Sequence

augcuaacgacccugaaugauagcuugcucgaUGAGGUAGUAGGUUGUAUAGUUaugaguuguaccauaaucggagaaacuguccagccugcuagcuugccgugcgggucuaucauccgucccc
........(((...((.(((((((((((.((.((((.((((((((((.(((((((((........)))).........))))).)))))))))).)))).)).))))).)))))))).)))...

Structure

augcuaac   ccu  a      -     u  a    G          U     ---------    agu 
        gac   ga ugauag cuugc cg UGAG UAGUAGGUUG AUAGU         Uaug   u
        |||   || |||||| ||||| || |||| |||||||||| |||||         ||||    
        cug   cu acuauc gggcg gc guuc aucguccgac uguca         auac   g
-----ccc   --c  -      u     u  c    g          c     aagaggcua    cau

Annotation confidence Not enough data

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Genome context

Bmal_v3_scaffold247: 47896-48019 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bma-let-7

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature bma-let-7

Accession	MIMAT0014094
Description	Brugia malayi bma-let-7 mature miRNA
Sequence	33 - UGAGGUAGUAGGUUGUAUAGUU - 54
Evidence	experimental Northern [1], Illumina [2]

References

PubMed ID: 19874857
Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
"Poole CB, Davis PJ, Jin J, McReynolds LA"
"Mol Biochem Parasitol (2010) 169:87-94

PubMed ID: 24824352
Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
PLoS One (2014) 9:e96498