Stem-loop bma-mir-2b-1

Accession

MI0013322

Description

Brugia malayi bma-mir-2b-1 precursor miRNA

Literature search

3 open access papers mention bma-mir-2b-1
(36 sentences)

Sequence

324071 reads, 24691.0 reads per million, 26 experiments

gagcgguAGUUGUAUCGGCUGUGAUAUGuuguaugauugguuguugcucaCAUCACAGACCCGAUGCAGCGACugcacuugugcuacucccg
..(((((.(((((((((((((((((.((..(((...........))).)).)))))))..)))))))))).)))))................

Structure

--------------ga     A          --       A  uu   ugau 
                gcggu GUUGUAUCGG  CUGUGAU UG  gua    u
                ||||| ||||||||||  ||||||| ||  |||    g
                cguCA CGACGUAGCC  GACACUA ac  cgu    g
gcccucaucguguuca     G          CA       C  -u   uguu 

Annotation confidence High

Genome context

Bmal_v3_scaffold153: 8299-8390 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from bma-mir-2b-1

Mature bma-miR-2b-1-5p

• Accession: MIMAT0057202
• Description: Brugia malayi bma-miR-2b-1-5p mature miRNA
• Sequence: 8 - AGUUGUAUCGGCUGUGAUAUG - 28
• Evidence: experimental ; cloned [1], Northern [1], Illumina [2]

Mature bma-miR-2b-3p

• Accession: MIMAT0014097
• Description: Brugia malayi bma-miR-2b-3p mature miRNA
• Sequence: 51 - CAUCACAGACCCGAUGCAGCGAC - 73
• Evidence: experimental ; cloned [1], Northern [1], Illumina [2]

References

1. PubMed ID: 19874857
   Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
   "Poole CB, Davis PJ, Jin J, McReynolds LA"
   "Mol Biochem Parasitol (2010) 169:87-94


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498