Stem-loop bma-mir-34

Accession

MI0013327

Description

Brugia malayi bma-mir-34 precursor miRNA

Literature search

7 open access papers mention bma-mir-34
(16 sentences)

Sequence

1849446 reads, 86589.0 reads per million, 26 experiments

ccaaauacggggauuuaccgggUGGCAGUGUGGUUAGCUGGUUGUcagcauaucggacaacGGCUAUCAUCACUGCCGUCCugguuuuccuaaaguucagcaucuuccugu
.........((((...((((((((((((((((((.(((((.(((((.........)))))))))))))).)))))))).))))))..))))....................

Structure

-----------ccaaauacg    uuu      -        -    U     G     agc 
                    ggga   accggg UGGCAGUG UGGU AGCUG UUGUc   a
                    ||||   |||||| |||||||| |||| ||||| |||||   u
                    uccu   ugguCC GCCGUCAC ACUA UCGGc aacag   a
uguccuucuacgacuugaaa    -uu      U        U    -     -     gcu 

Annotation confidence Medium

Genome context

Bmal_v3_scaffold3: 1411673-1411783 [+]

Mature bma-miR-34-5p

• Accession: MIMAT0014101
• Description: Brugia malayi bma-miR-34-5p mature miRNA
• Sequence: 23 - UGGCAGUGUGGUUAGCUGGUUGU - 45
• Evidence: experimental ; Illumina [2]

Mature bma-miR-34-3p

• Accession: MIMAT0057205
• Description: Brugia malayi bma-miR-34-3p mature miRNA
• Sequence: 62 - GGCUAUCAUCACUGCCGUCC - 81
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19874857
   Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
   "Poole CB, Davis PJ, Jin J, McReynolds LA"
   "Mol Biochem Parasitol (2010) 169:87-94


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498