miRBase entry: bma-mir-36b

Stem-loop bma-mir-36b

Accession

MI0013329

Description

Brugia malayi bma-mir-36b precursor miRNA

Literature search

1 open access papers mention bma-mir-36b
(8 sentences)

Sequence

uaacuguuCGGGAUAGUCUCUCACGGUAGAGCuugagaauaaucaaauugcUCACCGGAGACAUUAUUCCGCAuagguaugguacauuccc
...((((.(((((((((.((((.((((.((((((((......))))...)))))))))))).))))))))).))))....((......)).

Structure

------------uaa    u         C    A    A    ---    ga 
               cugu CGGGAUAGU UCUC CGGU GAGC   uuga  a
               |||| ||||||||| |||| |||| ||||   ||||   
               gauA GCCUUAUUA AGAG GCCA CUcg   aacu  u
cccuuacaugguaug    C         C    -    -    uua    aa

Annotation confidence Not enough data

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Genome context

Bmal_v3_scaffold153: 8423-8513 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from bma-mir-36b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature bma-miR-36b-3p

Accession	MIMAT0014103
Description	Brugia malayi bma-miR-36b-3p mature miRNA
Sequence	52 - UCACCGGAGACAUUAUUCCGCA - 73
Evidence	experimental Illumina [2]

Mature bma-miR-36b-5p

Accession	MIMAT0037377
Description	Brugia malayi bma-miR-36b-5p mature miRNA
Sequence	9 - CGGGAUAGUCUCUCACGGUAGAGC - 32
Evidence	experimental Illumina [2]

References

PubMed ID: 19874857
Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
"Poole CB, Davis PJ, Jin J, McReynolds LA"
"Mol Biochem Parasitol (2010) 169:87-94

PubMed ID: 24824352
Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
PLoS One (2014) 9:e96498