Stem-loop bma-mir-50

Accession

MI0013330

Description

Brugia malayi bma-mir-50 precursor miRNA

Literature search

2 open access papers mention bma-mir-50
(2 sentences)

Sequence

291687 reads, 6965.0 reads per million, 26 experiments

gcacuuccugcauaugcaguguUGAUAUGUCUGAUAUUCUUGGGUUgugcaaagucaaCCAGCAUCUCAGACGUAUCGGCCacuguguauu
(((.....)))(((((((((((((((((((((((.((.((..(((((........))))))).)).))))))))))))).)))))))))).

Structure

gcacuuccugc          -             U  U  UG     ugc 
           auaugcagug uUGAUAUGUCUGA AU CU  GGUUg   a
           |||||||||| ||||||||||||| || ||  |||||    
           uaugugucaC GGCUAUGCAGACU UA GA  CCaac   a
----------u          C             C  C  --     uga 

Annotation confidence High

Genome context

Bmal_v3_scaffold79: 53411-53501 [-]

Mature bma-miR-50-5p

• Accession: MIMAT0014104
• Description: Brugia malayi bma-miR-50-5p mature miRNA
• Sequence: 23 - UGAUAUGUCUGAUAUUCUUGGGUU - 46
• Evidence: experimental ; Illumina [2]

Mature bma-miR-50-3p

• Accession: MIMAT0057206
• Description: Brugia malayi bma-miR-50-3p mature miRNA
• Sequence: 59 - CCAGCAUCUCAGACGUAUCGGCC - 81
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19874857
   Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
   "Poole CB, Davis PJ, Jin J, McReynolds LA"
   "Mol Biochem Parasitol (2010) 169:87-94


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498