Stem-loop bma-mir-71

Accession

MI0013332

Description

Brugia malayi bma-mir-71 precursor miRNA

Literature search

14 open access papers mention bma-mir-71
(77 sentences)

Sequence

621731 reads, 112450.0 reads per million, 26 experiments

agcaugcugugugucgguggUGAAAGACAUGGGUAGUGAGACGuuagaauuucaaggucgUAUCACUAUUCUGUUUUUCGCCucguaucac
........(((...(((.(((((((((((.((((((((((((.((........)).)))...)))))))))))))))))))))))...)))

Structure

agcaugcu   ugu   u           U         ---   G  aga 
        gug   cgg ggUGAAAGACA GGGUAGUGA   GAC uu   a
        |||   ||| ||||||||||| |||||||||   ||| ||    
        cac   gcu CCGCUUUUUGU CUUAUCACU   cug aa   u
--------   uau   -           -         AUg   g  cuu 

Annotation confidence High

Genome context

Bmal_v3_scaffold75: 45674-45764 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bma-mir-71

Mature bma-miR-71-5p

• Accession: MIMAT0014106
• Description: Brugia malayi bma-miR-71-5p mature miRNA
• Sequence: 21 - UGAAAGACAUGGGUAGUGAGACG - 43
• Evidence: experimental ; cloned [1], Illumina [2]

Mature bma-miR-71-3p

• Accession: MIMAT0057208
• Description: Brugia malayi bma-miR-71-3p mature miRNA
• Sequence: 61 - UAUCACUAUUCUGUUUUUCGCC - 82
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 19874857
   Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
   "Poole CB, Davis PJ, Jin J, McReynolds LA"
   "Mol Biochem Parasitol (2010) 169:87-94


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498