Stem-loop bma-mir-100d

Accession

MI0013341

Description

Brugia malayi bma-mir-100d precursor miRNA

Literature search

3 open access papers mention bma-mir-100d
(18 sentences)

Sequence

22758536 reads, 111023.0 reads per million, 26 experiments

uguuggugugugaccUACCCGUAGCUCCGAAUAUGUGugggacaaauugcacaacACAUAUCGGUCCACGGGAAAGccacacauugacuga
.(((((((((((.(...(((((.(..((((.(((((((.(..((...))..).)))))))))))..))))))...).)))))))))))...

Structure

--u           a cUA     A CU    A       g ga  a 
   guuggugugug c   CCCGU G  CCGA UAUGUGu g  ca  
   ||||||||||| |   ||||| |  |||| ||||||| |  || a
   caguuacacac G   GGGCA C  GGCU AUACAca c  gu  
agu           c AAA     - CU    -       a ac  u 

Annotation confidence High

Genome context

Bmal_v3_scaffold84: 110616-110706 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from bma-mir-100d

Mature bma-miR-100d-5p

• Accession: MIMAT0014115
• Description: Brugia malayi bma-miR-100d-5p mature miRNA
• Sequence: 16 - UACCCGUAGCUCCGAAUAUGUG - 37
• Evidence: experimental ; cloned [1], Illumina [2]

Mature bma-miR-100d-3p

• Accession: MIMAT0057214
• Description: Brugia malayi bma-miR-100d-3p mature miRNA
• Sequence: 56 - ACAUAUCGGUCCACGGGAAAG - 76
• Evidence: experimental ; cloned [1], Illumina [2]

References

1. PubMed ID: 19874857
   Cloning and bioinformatic identification of small RNAs in the filarial nematode, Brugia malayi
   "Poole CB, Davis PJ, Jin J, McReynolds LA"
   "Mol Biochem Parasitol (2010) 169:87-94


2. PubMed ID: 24824352
   Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
   Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
   PLoS One (2014) 9:e96498