Stem-loop aae-mir-1891-1

Accession

MI0013468

Description

Aedes aegypti aae-mir-1891-1 precursor miRNA

Gene family

MIPF0000857; mir-1891

Literature search

2 open access papers mention aae-mir-1891-1
(8 sentences)

Sequence

28136 reads, 1417 reads per million, 2 experiments

cuuuuuccgucauguUGAGGAGUUAAUUUGCGUGUUUuuguauuugauuaaacacguccauuaacucugguacaugaugauaaaagc
(((((..((((((((...(((((((((..((((((((............))))))))..)))))))))...))))))))..))))).

Structure

-     uc        UGA         UU        uugua 
 cuuuu  cgucaugu   GGAGUUAAU  GCGUGUUU     u
 |||||  ||||||||   |||||||||  ||||||||      
 gaaaa  guaguaca   ucucaauua  ugcacaaa     u
c     ua        ugg         cc        uuagu 

Annotation confidence Not enough data

Comments

This miRNA was identified independently in Aedes aegypti [1] and in the closely related Aedes albopictus, for which there was no genome sequence [2]. The latter reads were therefore also mapped to the Aedes aegypti genome [2].

Genome context

supercont1.199: 1109700-1109786 [-]

Mature aae-miR-1891

• Accession: MIMAT0014263
• Description: Aedes aegypti aae-miR-1891 mature miRNA
• Sequence: 16 - UGAGGAGUUAAUUUGCGUGUUU - 37
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 19961592
   Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
   Li S, Mead EA, Liang S, Tu Z
   BMC Genomics (2009) 10:581


2. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119