Stem-loop tgu-mir-1805

Accession

MI0013639

Description

Taeniopygia guttata tgu-mir-1805 precursor miRNA

Sequence

guggaauauucugggAGUUGUAGUCUUUCAAACAGAgcuucacaaggacauaccUGUAUUGGAACACUACAGCUcccugaacuuccuc
..((((..(((.((((((((((((.((((((((((...(((....))).....)))).)))))).)))))))))))).))).))))..

Structure

gu    ua   u            C      -    --Agc   a 
  ggaa  uuc gggAGUUGUAGU UUUCAA ACAG     uuc c
  ||||  ||| |||||||||||| |||||| ||||     |||  
  ccuu  aag cccUCGACAUCA AAGGUU UGUc     agg a
cu    -c   u            C      A    cauac   a 

Annotation confidence Not enough data

Genome context

chr1: 32735542-32735629 [+]

Mature tgu-miR-1805-5p

• Accession: MIMAT0014620
• Description: Taeniopygia guttata tgu-miR-1805-5p mature miRNA
• Sequence: 16 - AGUUGUAGUCUUUCAAACAGA - 36
• Evidence: experimental ; Illumina [1-2]

Mature tgu-miR-1805-3p

• Accession: MIMAT0014453
• Description: Taeniopygia guttata tgu-miR-1805-3p mature miRNA
• Sequence: 55 - UGUAUUGGAACACUACAGCU - 74
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727