Stem-loop tgu-mir-2960

Accession

MI0013647

Description

Taeniopygia guttata tgu-mir-2960 precursor miRNA

Sequence

ggccagagcgguggagguggaggcagcggcgggucuccuccuccccucccagcuccuggAGGCGACUCGGCUGCCUGCAGcucccucucucucc
((..((((.((.((((.((.(((((((..((((((.(((((................))))).))))))))))))).)).))))))))))..))

Structure

  cc    c  u    g  g       gg      u     uccccuc 
gg  agag gg ggag ug aggcagc  cggguc ccucc       c
||  |||| || |||| || |||||||  |||||| |||||        
cc  ucuc uc ccuc AC UCCGUCG  GCUCAG GGAgg       c
  uc    -  -    G  G       --      C     uccucga 

Annotation confidence Not enough data

Genome context

chr3: 39458890-39458983 [-]

Mature tgu-miR-2960

• Accession: MIMAT0014460
• Description: Taeniopygia guttata tgu-miR-2960 mature miRNA
• Sequence: 60 - AGGCGACUCGGCUGCCUGCAG - 80
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727