Stem-loop tgu-mir-146a

Accession

MI0013652

Description

Taeniopygia guttata tgu-mir-146a precursor miRNA

Sequence

ugugacgaauguuggcaguucccagcucUGAGAACUGAAUUCCAUGGACUgguuccaguuccauguguucAGUCCAUGGUAUUCAGUUCUCUagcuuggcugcaucaaacuucaca
(((((.(..((...((((((...((((..(((((((((((.(((((((((((...((......))...))))))))))).))))))))))).)))).))))))..))..).)))))

Structure

     c aa  uug      ccc    cU           U           uuc  gu 
uguga g  ug   gcaguu   agcu  GAGAACUGAAU CCAUGGACUgg   ca  u
||||| |  ||   ||||||   ||||  ||||||||||| |||||||||||   ||   
acacu c  ac   cgucgg   ucga  CUCUUGACUUA GGUACCUGAcu   gu  c
     u aa  -ua      --u    -U           U           ugu  ac 

Annotation confidence Not enough data

Genome context

chr4: 69209753-69209868 [-]

Mature tgu-miR-146a-5p

• Accession: MIMAT0014622
• Description: Taeniopygia guttata tgu-miR-146a-5p mature miRNA
• Sequence: 29 - UGAGAACUGAAUUCCAUGGACU - 50
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature tgu-miR-146a-3p

• Accession: MIMAT0014465
• Description: Taeniopygia guttata tgu-miR-146a-3p mature miRNA
• Sequence: 71 - AGUCCAUGGUAUUCAGUUCUCU - 92
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727