miRBase entry: tgu-mir-204-4

Stem-loop tgu-mir-204-4

Accession

MI0013794

Description

Taeniopygia guttata tgu-mir-204-4 precursor miRNA

Literature search

1 open access papers mention tgu-mir-204-4
(1 sentences)

Sequence

cccugugagcUUCCCUUUGUCAUCCUAUGCCUgagcgaugccuggaggcugggacggccaagggaggcccacgggcugccacccacagcccc
....(((.(((((((((.(((.(((((.((((..((...))....))))))))).))).))))))))).)))((((((.......)))))).

Structure

----------------cccu   a         U   A     U    --ga  g 
                    gug gcUUCCCUU GUC UCCUA GCCU    gc  
                    ||| ||||||||| ||| ||||| ||||    || a
                    cac cggagggaa cgg agggu cgga    cg  
ccccgacacccaccgucggg   c         c   c     -    gguc  u

Annotation confidence Not enough data

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Genome context

chr28: 1367959-1368050 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tgu-mir-204-4

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tgu-miR-204

Accession	MIMAT0014570
Description	Taeniopygia guttata tgu-miR-204 mature miRNA
Sequence	11 - UUCCCUUUGUCAUCCUAUGCCU - 32
Evidence	experimental Illumina [1-2]

References

PubMed ID: 20360741
The genome of a songbird
"Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
"Nature (2010) 464:757-762

PubMed ID: 23268654
Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
BMC Genomics (2012) 13:727