Stem-loop tgu-mir-200b

Accession

MI0013820

Description

Taeniopygia guttata tgu-mir-200b precursor miRNA

Sequence

cagcAUCUUACUGGGCAGCAUUGGAugauccaugccgcucUAAUACUGCCUGGUAAUGAUGAUgaaggcucuu
((.(((((((((((((((.((((((((........)).)))))).))))))))))).)))).)).........

Structure

---------  g    -           C      -  auc 
         ca cAUC UUACUGGGCAG AUUGGA ug   c
         || |||| ||||||||||| |||||| ||    
         gU GUAG AAUGGUCCGUC UAAUcu gc   a
uucucggaa  A    U           A      c  cgu 

Annotation confidence Not enough data

Genome context

chr21: 5892896-5892968 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tgu-mir-200b

Mature tgu-miR-200b-5p

• Accession: MIMAT0014649
• Description: Taeniopygia guttata tgu-miR-200b-5p mature miRNA
• Sequence: 5 - AUCUUACUGGGCAGCAUUGGA - 25
• Evidence: experimental ; 454 [1], Illumina [2]

Mature tgu-miR-200b-3p

• Accession: MIMAT0014592
• Description: Taeniopygia guttata tgu-miR-200b-3p mature miRNA
• Sequence: 41 - UAAUACUGCCUGGUAAUGAUGAU - 63
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727