Stem-loop tgu-mir-18b

Accession

MI0013837

Description

Taeniopygia guttata tgu-mir-18b precursor miRNA

Sequence

acuucuggcauuacuguggcgauuccguggugguggcagggcacggacaaaaccaggauuguugugcugccuuaggccacgcugcaaaagguccuuguguUAAGGUGCAUCUAGUGCAGUUAgugauguagc
.......(((((((((.((.....))(((((...(((((.(((...((((........))))))).)))))....)))))((((((..(((((((((...)))))...))))..)))))))))))))))...

Structure

acuucug         uggcgauuccguggugguggcagggcacggacaaaaccaggauuguugugcugccuuaggccac      aa    ---     u 
       gcauuacug                                                                gcugca  aggu   ccuug  
       |||||||||                                                                ||||||  ||||   ||||| g
       uguagugAU                                                                UGACGU  UCUA   GGAAU  
----cga         ----------------------------------------------------------------      GA    CGU     u 

Annotation confidence Not enough data

Genome context

chr4A: 7273805-7273936 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from tgu-mir-18b

Mature tgu-miR-18b

• Accession: MIMAT0014607
• Description: Taeniopygia guttata tgu-miR-18b mature miRNA
• Sequence: 101 - UAAGGUGCAUCUAGUGCAGUUA - 122
• Evidence: experimental ; 454 [1], Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727