Stem-loop tgu-mir-19a

Accession

MI0013841

Description

Taeniopygia guttata tgu-mir-19a precursor miRNA

Sequence

cuguUAGUUUUGCAUAGUUGCACUacaagaagagagugguUGUGCAAAUCUAUGCAAAGCugaugguggc
(((((((((((((((((((((((.((............)).))))))..)))))))))))))))))....

Structure

----                 --      U  aagaa 
    cuguUAGUUUUGCAUAG  UUGCAC ac     g
    |||||||||||||||||  |||||| ||      
    gguaguCGAAACGUAUC  AACGUG ug     a
cggu                 UA      U  gugag 

Annotation confidence Not enough data

Genome context

chr1: 43202791-43202860 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from tgu-mir-19a

Mature tgu-miR-19a-3p

• Accession: MIMAT0014611
• Description: Taeniopygia guttata tgu-miR-19a-3p mature miRNA
• Sequence: 41 - UGUGCAAAUCUAUGCAAAGC - 60
• Evidence: experimental ; 454 [1], Illumina [2]

Mature tgu-miR-19a-5p

• Accession: MIMAT0027023
• Description: Taeniopygia guttata tgu-miR-19a-5p mature miRNA
• Sequence: 5 - UAGUUUUGCAUAGUUGCACU - 24
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727