Stem-loop tgu-mir-199-2

Accession

MI0013847

Description

Taeniopygia guttata tgu-mir-199-2 precursor miRNA

Sequence

gcguccggagauccugcuccgucgcCCCAGUGUUCAGACUACCUGUUcaggacaaugcuguuguACAGUAGUCUGCACAUUGGUUagacugggcaagggaaagcggcggcguggacuauuggggacgc
((((((..((.(((.((.(((((((.((..(((((((.((((((((.(((.((..((((((...))))))))))).)))..)).))).)))))))..))...))))))).))))))).....))))))

Structure

      ---gg  a   u  u       --C  AG       A   -  --   U   g  aa      u 
gcgucc     ag ucc gc ccgucgc   CC  UGUUCAG CUA CC  UGU cag ac  ugcugu  
||||||     || ||| || |||||||   ||  ||||||| ||| ||  ||| ||| ||  |||||| g
cgcagg     uc agg ug ggcggcg   gg  acggguc gaU GG  ACA GUC UG  AUGACA  
      gguua  -   -  c       aaa  ga       a   U  UU   C   -  --      u 

Annotation confidence Not enough data

Genome context

chr8_random: 1629749-1629876 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from tgu-mir-199-2

Mature tgu-miR-199-5p

• Accession: MIMAT0014645
• Description: Taeniopygia guttata tgu-miR-199-5p mature miRNA
• Sequence: 26 - CCCAGUGUUCAGACUACCUGUU - 47
• Evidence: experimental ; 454 [1], Illumina [1-2]

Mature tgu-miR-199-3p

• Accession: MIMAT0014617
• Description: Taeniopygia guttata tgu-miR-199-3p mature miRNA
• Sequence: 65 - ACAGUAGUCUGCACAUUGGUU - 85
• Evidence: experimental ; 454 [1], Illumina [1-2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727