miRBase entry: bmo-mir-2733h

Stem-loop bmo-mir-2733h


Accession
MI0013859
Description
Bombyx mori bmo-mir-2733h precursor miRNA
Gene family
MIPF0000766; mir-2733

Literature search
1 open access papers mention bmo-mir-2733h
(4 sentences)

Sequence

9 reads, 1 reads per million, 2 experiments
ucucucuaaugcagucaucauacucugaguugauauguggaaaauucuaUCACUGGGUGUAUGAUGAUUGugguagagaga
((((((((.((((((((((((((.((.(((.((((.((.....))..))))))).)).)))))))))))))).))))))))

Structure
        a              u  g   u    -u  g 
ucucucua ugcagucaucauac cu agu gaua  gu g
|||||||| |||||||||||||| || ||| ||||  || a
agagagau guGUUAGUAGUAUG GG UCA CUau  ua a
        g              U  G   -    cu  a 


Annotation confidence Not enough data
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Genome context
NW_004581684.1: 347062-347142 [-]
Clustered miRNAs
14 other miRNAs are < 10 kb from bmo-mir-2733h
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-2733h

Accession MIMAT0014663
Description Bombyx mori bmo-miR-2733h mature miRNA
Sequence 50 - UCACUGGGUGUAUGAUGAUUG - 70
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20089182
    Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development
    Jagadeeswaran G, Zheng Y, Sumathipala N, Jiang H, Arrese EL, Soulages JL, Zhang W, Sunkar R
    BMC Genomics (2010) 11:52