miRBase entry: hsa-mir-3130-1

Stem-loop hsa-mir-3130-1


Accession
MI0014147
Symbol
HGNC: MIR3130-1
Description
Homo sapiens hsa-mir-3130-1 precursor miRNA mir-3130
Gene
family?
RF03736; mir-3130

Literature search
2 open access papers mention hsa-mir-3130-1
(5 sentences)

Sequence

1683 reads, 118 reads per million, 78 experiments
cuugucaugucuUACCCAGUCUCCGGUGCAGCCuguugucaagGCUGCACCGGAGACUGGGUAAgacaugacaag
((((((((((((((((((((((((((((((((((.......))))))))))))))))))))))))))))))))))

Structure
                                  gu 
cuugucaugucuUACCCAGUCUCCGGUGCAGCCu  u
||||||||||||||||||||||||||||||||||  g
gaacaguacagAAUGGGUCAGAGGCCACGUCGga  u
                                  ac 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr2: 206783234-206783308 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from hsa-mir-3130-1
Name Accession Chromosome Start End Strand Confidence




Disease association
hsa-mir-3130-1 is associated with one or more human diseases in the Human microRNA Disease Database
Disease Description Category PubMed ID


Database links

Mature hsa-miR-3130-3p

Accession MIMAT0014994
Description Homo sapiens hsa-miR-3130-3p mature miRNA
Sequence 44 - GCUGCACCGGAGACUGGGUAA - 64
Evidence experimental
Illumina [1-3]
Database links
Predicted targets

Mature hsa-miR-3130-5p

Accession MIMAT0014995
Description Homo sapiens hsa-miR-3130-5p mature miRNA
Sequence 13 - UACCCAGUCUCCGGUGCAGCC - 33
Evidence

References

  1. PubMed ID: 20300190
    Characterization of the Melanoma miRNAome by Deep Sequencing
    "Stark MS, Tyagi S, Nancarrow DJ, Boyle GM, Cook AL, Whiteman DC, Parsons PG, Schmidt C, Sturm RA, Hayward NK"
    "PLoS One (2010) 5:e9685

  2. PubMed ID: 20224791
    Discovery of novel microRNAs in female reproductive tract using next generation sequencing
    Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH
    PLoS One (2010) 5:e9637

  3. PubMed ID: 21199797
    Identification of new microRNAs in paired normal and tumor breast tissue suggests a dual role for the ERBB2/Her2 gene
    "Persson H, Kvist A, Rego N, Staaf J, Vallon-Christersson J, Luts L, Loman N, Jonsson G, Naya H, Hoglund M, Borg A, Rovira C"
    "Cancer Res (2011) 71:78-86