miRBase entry: bmo-mir-2733b-2

Stem-loop bmo-mir-2733b-2


Accession
MI0014413
Description
Bombyx mori bmo-mir-2733b-2 precursor miRNA
Gene family
MIPF0000766; mir-2733

Literature search
1 open access papers mention bmo-mir-2733b-2
(6 sentences)

Sequence

16 reads, 1 reads per million, 3 experiments
uaacauucuaUCACUGGGUGCGUGAUGAUUGUgguagagauuuucacauaacgccaccaucacaugugacaucucuccugucucucuguaaugcagucaucauacucacaguugauauguuugacauuc
...((..(((((((((.(.(.(((((((((((((.((((((..((((((..............)))))).))))))))..............))))))))))).).).))).))))).)..))......

Structure
---uaa  uu -     -   G U C           --------------  u      uu      aacgcc 
      ca  c uaUCA CUG G G GUGAUGAUUGU              gg agagau  ucacau      a
      ||  | ||||| ||| | | |||||||||||              || ||||||  ||||||       
      gu  g auagu gac c c uacuacugacg              cc ucucua  agugua      c
cuuaca  uu u     u   a u a           uaaugucucucugu  -      -c      cacuac 


Annotation confidence Not enough data
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Genome context
NW_004581684.1: 347220-347348 [-]
Clustered miRNAs
14 other miRNAs are < 10 kb from bmo-mir-2733b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-2733b

Accession MIMAT0013777
Description Bombyx mori bmo-miR-2733b mature miRNA
Sequence 11 - UCACUGGGUGCGUGAUGAUUGU - 32
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415