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miRBase entry: ppy-mir-320c-2
How is the hairpin structure generated?
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We have generated a dot-bracket structure for each sequence using RNAfold.
Unambiguous secondary structure.
Parsed and ASCII art drawn.
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Stem-loop
ppy-mir-320c-2
Accession
MI0014888
Description
Pongo pygmaeus
ppy-mir-320c-2 precursor miRNA
Sequence
cuucucuuuccaguucuuuccagaauugggAAAAGCUGGGUUGAGAGGGU
((((((..(((((((.((((((....)))))).)))))))..))))))..
Structure
-- uu c g cuucuc uccaguu uuucca a |||||| ||||||| |||||| GGAGAG GGGUCGA AAgggu a UG UU A u
Annotation confidence
Not enough data
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Genome context
chr18: 35989131-35989180 [+]
Database links
Mature
ppy-miR-320c
Accession
MIMAT0015823
Description
Pongo pygmaeus
ppy-miR-320c mature miRNA
Sequence
31 - AAAAGCUGGGUUGAGAGGGU - 50
Evidence
not_experimental
References
PubMed ID:
20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64