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miRBase entry: ppy-mir-320d-1
How is the hairpin structure generated?
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We have generated a dot-bracket structure for each sequence using RNAfold.
Unambiguous secondary structure.
Parsed and ASCII art drawn.
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Stem-loop
ppy-mir-320d-1
Accession
MI0014889
Description
Pongo pygmaeus
ppy-mir-320d-1 precursor miRNA
Sequence
uucucuucccaguucuucccaaaguugagAAAAGCUGGGUUGAGAGGA
(((((..(((((((.(((.((....)).))).)))))))..)))))..
Structure
-- uu c c a uucuc cccaguu uuc ca a ||||| ||||||| ||| || GAGAG GGGUCGA AAg gu g AG UU A a u
Annotation confidence
Not enough data
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Genome context
chr13: 40656341-40656388 [-]
Database links
Mature
ppy-miR-320d
Accession
MIMAT0015824
Description
Pongo pygmaeus
ppy-miR-320d mature miRNA
Sequence
30 - AAAAGCUGGGUUGAGAGGA - 48
Evidence
not_experimental
References
PubMed ID:
20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64