miRBase entry: ppy-mir-542

Stem-loop ppy-mir-542

Accession

MI0015040

Description

Pongo pygmaeus ppy-mir-542 precursor miRNA

Sequence

cagaucucagacaucUCGGGGAUCAUCAUGUCACGAGAuaccagugugcacuUGUGACAGAUUGAUAACUGAAAggucugggagccacucaucuuc
....((((((((...((((..((((...(((((((((.(((....)))..)))))))))...))))..))))...)))))))).............

Structure

---------caga        auc    GG    UCA         -A   c 
             ucucagac   UCGG  AUCA   UGUCACGAG  uac a
             ||||||||   ||||  ||||   |||||||||  |||  
             agggucug   AGUC  UAGU   ACAGUGUuc  gug g
cuucuacucaccg        gAA    AA    UAG         ac   u

Annotation confidence Not enough data

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Genome context

chrX: 134000586-134000681 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ppy-mir-542

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-542-5p

Accession	MIMAT0015991
Description	Pongo pygmaeus ppy-miR-542-5p mature miRNA
Sequence	16 - UCGGGGAUCAUCAUGUCACGAGA - 38
Evidence	not_experimental

Mature ppy-miR-542-3p

Accession	MIMAT0015992
Description	Pongo pygmaeus ppy-miR-542-3p mature miRNA
Sequence	53 - UGUGACAGAUUGAUAACUGAAA - 74
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64