miRBase entry: ppy-mir-545

Stem-loop ppy-mir-545

Accession

MI0015043

Description

Pongo pygmaeus ppy-mir-545 precursor miRNA

Sequence

cccagccuggcacauuaguaggccucaguaaauguuuauuagaugaauaaaugaaugacucaUCAGCAAACAUUUAUUGUGUGCcugcuaaagugagcuccacagg
.....((((((((.((((((((((.((((((((((((.((.(((((.............))))))).)))))))))))).).))))))))).))).....).))))

Structure

cccag    - -----   a         - u            a  a     auaaa 
     ccug g     cac uuaguaggc c caguaaauguuu uu gauga     u
     |||| |     ||| ||||||||| | |||||||||||| || |||||     g
     ggac c     gug aaucgucCG G GUUAUUUACAAA GA CUacu     a
-----    a cucga   a         U U            C  -     cagua

Annotation confidence Not enough data

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Genome context

chrX: 71755565-71755670 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-545

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-545

Accession	MIMAT0015995
Description	Pongo pygmaeus ppy-miR-545 mature miRNA
Sequence	63 - UCAGCAAACAUUUAUUGUGUGC - 84
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64