miRBase entry: ppy-mir-647

Stem-loop ppy-mir-647

Accession

MI0015123

Description

Pongo pygmaeus ppy-mir-647 precursor miRNA

Sequence

aggaaguguuggccuGUGGCUCCACUCACUUCCUUCagccccaggaagccuuggucuggggcaggagggagggccaggcagggcugggggccug
..........(((((.((((((..((..((((((((.((((((((.........))))))))..))))))))...))...)))))).)))))..

Structure

aggaaguguu     G      -CA  -CA        -a        aag 
          ggccu UGGCUC   CU   CUUCCUUC  gccccagg   c
          ||||| ||||||   ||   ||||||||  ||||||||   c
          ccggg gucggg   ga   ggagggag  cggggucu   u
--------gu     g      acg  ccg        ga        ggu

Annotation confidence Not enough data

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Genome context

chr20: 62382410-62382503 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-mir-647

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-miR-647

Accession	MIMAT0016081
Description	Pongo pygmaeus ppy-miR-647 mature miRNA
Sequence	16 - GUGGCUCCACUCACUUCCUUC - 36
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64