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miRBase entry: ppy-mir-1469
How is the hairpin structure generated?
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We have generated a dot-bracket structure for each sequence using RNAfold.
Unambiguous secondary structure.
Parsed and ASCII art drawn.
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Stem-loop
ppy-mir-1469
Accession
MI0015270
Description
Pongo pygmaeus
ppy-mir-1469 precursor miRNA
Sequence
CUCGGCGCGGGGCGCGGGCUCCggguuggggcgagccaacgccgggg
(((((((...(((....(((((.....)))))..)))..))))))).
Structure
- CGG GCGG g CUCGGCG GGC GCUCC g ||||||| ||| ||||| g gggccgc ccg cgggg u g -aa --ag u
Annotation confidence
Not enough data
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Genome context
chr15: 93288100-93288146 [+]
Database links
Mature
ppy-miR-1469
Accession
MIMAT0016232
Description
Pongo pygmaeus
ppy-miR-1469 mature miRNA
Sequence
1 - CUCGGCGCGGGGCGCGGGCUCC - 22
Evidence
not_experimental
References
PubMed ID:
20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64