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miRBase entry: ppy-mir-1537
How is the hairpin structure generated?
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We have generated a dot-bracket structure for each sequence using RNAfold.
Unambiguous secondary structure.
Parsed and ASCII art drawn.
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Stem-loop
ppy-mir-1537
Accession
MI0015272
Description
Pongo pygmaeus
ppy-mir-1537 precursor miRNA
Sequence
acagcuguaauuagucaguuuucuguccuguccacacagAAAACUGUCUAAUUACAGUUGU
((((((((((((((.(((((((((((.........))))))))))).))))))))))))))
Structure
u ccu acagcuguaauuag caguuuucugu g |||||||||||||| ||||||||||| u UGUUGACAUUAAUC GUCAAAAgaca c U cac
Annotation confidence
Not enough data
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Genome context
chr1: 13674016-13674076 [+]
Database links
Mature
ppy-miR-1537
Accession
MIMAT0016234
Description
Pongo pygmaeus
ppy-miR-1537 mature miRNA
Sequence
40 - AAAACUGUCUAAUUACAGUUGU - 61
Evidence
not_experimental
References
PubMed ID:
20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64