Stem-loop rno-mir-3590

Accession

MI0015468

Description

Rattus norvegicus rno-mir-3590 precursor miRNA

Literature search

1 open access papers mention rno-mir-3590
(1 sentences)

Sequence

305131 reads, 3 reads per million, 502 experiments

ggccgaUGCCCUUUUAACAUUGCACUGcucgguacacguguagacagUAGCACAAUGUGAAAAGAGCUCcggcc
(((((..((.(((((.((((((..(((((...(((....)))...)))))..)))))).))))).))..)))))

Structure

     aU  C     A      CA     cgg   a 
ggccg  GC CUUUU ACAUUG  CUGcu   uac c
|||||  || ||||| ||||||  |||||   |||  
ccggc  CG GAAAA UGUAAC  GAUga   aug g
     CU  A     G      AC     cag   u 

Annotation confidence Not enough data

Genome context

chr3: 72141044-72141117 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-3590

Mature rno-miR-3590-5p

• Accession: MIMAT0017889
• Description: Rattus norvegicus rno-miR-3590-5p mature miRNA
• Sequence: 7 - UGCCCUUUUAACAUUGCACUG - 27
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-3590-3p

• Accession: MIMAT0017890
• Description: Rattus norvegicus rno-miR-3590-3p mature miRNA
• Sequence: 48 - UAGCACAAUGUGAAAAGAGCUC - 69
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249