Stem-loop ame-mir-1175

Accession

MI0016137

Description

Apis mellifera ame-mir-1175 precursor miRNA

Literature search

2 open access papers mention ame-mir-1175
(2 sentences)

Sequence

127651 reads, 1924.0 reads per million, 24 experiments

caaaaauaaauaauaugcaagaaagggauuaugguuCAAGUGGAGAAGUGGUCUUUACGCUuugaauuaaagUGAGAUUCACUCCUCCAACUUACUccugaucccuaauauucuucguuuuuuuuuuuuauuuguuuc
...((((((((((...(((((((((((((((.((...((((((((.((((((((...(((((((...)))))))))).))))).)))).))))...))))))))))....))))).)).........)))))))))).

Structure

caa          ------uau  -     ----        u  uuC    -    A     -   UUA       a 
   aaauaaauaa         gc aagaa    agggauua gg   AAGU GGAG AGUGG UCU   CGCUuug  
   ||||||||||         || |||||    |||||||| ||   |||| |||| ||||| |||   ||||||| a
   uuuguuuauu         ug uucuu    ucccuagu cc   UUCA CCUC UCACU AGA   GUgaaau  
--c          uuuuuuuuu  c     auaa        -  UCA    A    C     U   ---       u 

Annotation confidence High

Genome context

GL631151.1: 2090-2227 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ame-mir-1175

Mature ame-miR-1175-5p

• Accession: MIMAT0053081
• Description: Apis mellifera ame-miR-1175-5p mature miRNA
• Sequence: 37 - CAAGUGGAGAAGUGGUCUUUACGCU - 61
• Evidence: experimental ; SOLID [1], Illumina [2]

Mature ame-miR-1175-3p

• Accession: MIMAT0018507
• Description: Apis mellifera ame-miR-1175-3p mature miRNA
• Sequence: 73 - UGAGAUUCACUCCUCCAACUUACU - 96
• Evidence: experimental ; SOLID [1], Illumina [2]

References

1. PubMed ID: 20807255
   Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
   "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
   "Insect Mol Biol (2010) 19:799-805


2. PubMed ID: 26853694
   MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (Apis mellifera L.)
   "Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simoes ZL"
   "Insect Mol Biol (2016) 25:216-226