Stem-loop ame-mir-307

Accession

MI0016139

Description

Apis mellifera ame-mir-307 precursor miRNA

Literature search

3 open access papers mention ame-mir-307
(4 sentences)

Sequence

14930 reads, 234.0 reads per million, 24 experiments

gaggagcaucucgaaaauggcggucacguggACUCACUCAACCUGGGUGUGAUGcuugccuguguaucaggcccuagcggucauCACAACCUUUUUGAGUGAGCGAAcgcgacuguuuuaucgaccauaucca
..(((.....((((....(((((((.(((...(((((((((...((((((((((((.(((((.....)))))...)))....))))).))))..)))))))))...))).)))))))...)))).....))).

Structure

ga   gcauc    aaau       a   ggA         CCU    -     ----   --u     u 
  gga     ucga    ggcgguc cgu   CUCACUCAA   GGGU GUGAU    Gcu   gccug g
  |||     ||||    ||||||| |||   |||||||||   |||| |||||    |||   ||||| u
  ccu     agcu    uugucag gcA   GAGUGAGUU   UCCA CACua    cga   cggac a
-a   auacc    -auu       c   AGC         -UU    A     cugg   ucc     u 

Annotation confidence High

Genome context

CM000054.5: 7127563-7127695 [+]

Mature ame-miR-307-5p

• Accession: MIMAT0053082
• Description: Apis mellifera ame-miR-307-5p mature miRNA
• Sequence: 32 - ACUCACUCAACCUGGGUGUGAUG - 54
• Evidence: experimental ; SOLID [1], Illumina [2]

Mature ame-miR-307-3p

• Accession: MIMAT0018509
• Description: Apis mellifera ame-miR-307-3p mature miRNA
• Sequence: 85 - CACAACCUUUUUGAGUGAGCGAA - 107
• Evidence: experimental ; SOLID [1], Illumina [2]

References

1. PubMed ID: 20807255
   Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
   "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
   "Insect Mol Biol (2010) 19:799-805


2. PubMed ID: 22409512
   Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
   "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
   "Genes Brain Behav (2012) 11:660-670