Stem-loop ame-mir-2788

Accession

MI0016140

Description

Apis mellifera ame-mir-2788 precursor miRNA

Sequence

4028 reads, 71.0 reads per million, 24 experiments

agguuggaguucguugcggcaggguUGGGGUUUCUAUGCGGCAUGUGccuugcuuugagaaaugCAAUGCCCUUCGAAAUCCCAaaaauguccaacgcuuaucaaca
..(((((....(((((.((((...((((((((((...(.(((((.(((.((.........)).)))))))))...))))))))))...)))))))))....))))).

Structure

ag     aguu     c    ggg          UAU C     G   c  gcu 
  guugg    cguug ggca   uUGGGGUUUC   G GGCAU UGc uu   u
  |||||    ||||| ||||   ||||||||||   | ||||| ||| ||   u
  caacu    gcaac cugu   aACCCUAAAG   C CCGUA ACg aa   g
-a     auuc     -    aaa          CUU -     -   u  aga 

Annotation confidence High

Genome context

CM000054.5: 211099-211205 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ame-mir-2788

Mature ame-miR-2788-5p

• Accession: MIMAT0053083
• Description: Apis mellifera ame-miR-2788-5p mature miRNA
• Sequence: 26 - UGGGGUUUCUAUGCGGCAUGUG - 47
• Evidence: experimental ; SOLID [1], Illumina [2]

Mature ame-miR-2788-3p

• Accession: MIMAT0018510
• Description: Apis mellifera ame-miR-2788-3p mature miRNA
• Sequence: 65 - CAAUGCCCUUCGAAAUCCCA - 84
• Evidence: experimental ; SOLID [1], Illumina [2]

References

1. PubMed ID: 20807255
   Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
   "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
   "Insect Mol Biol (2010) 19:799-805


2. PubMed ID: 26853694
   MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (Apis mellifera L.)
   "Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simoes ZL"
   "Insect Mol Biol (2016) 25:216-226