Stem-loop ame-mir-3477

Accession

MI0016213

Description

Apis mellifera ame-mir-3477 precursor miRNA

Literature search

2 open access papers mention ame-mir-3477
(7 sentences)

Sequence

299037 reads, 4156.0 reads per million, 24 experiments

uuugguagcguuggagugggUAAUCUCAUGCGGUAACUGUGAgugugugaauuguaaaagcuCAUAUUACCUCGUGGGGUUUCCcacccguuaccauua
..(((((((...((.(((((.(((((((((.(((((.(((((((...............)))))))))))).))))))))).))))))))))))))...

Structure

-uu       guu  a     U         C     C       guguga 
   ugguagc   gg guggg AAUCUCAUG GGUAA UGUGAgu      a
   |||||||   || ||||| ||||||||| ||||| |||||||      u
   accauug   cc cacCC UUGGGGUGC CCAUU AUACucg      u
auu       ---  -     U         U     -       aaaaug 

Annotation confidence High

Genome context

CM000055.5: 3363469-3363567 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ame-mir-3477

Mature ame-miR-3477-5p

• Accession: MIMAT0018583
• Description: Apis mellifera ame-miR-3477-5p mature miRNA
• Sequence: 21 - UAAUCUCAUGCGGUAACUGUGA - 42
• Evidence: experimental ; SOLID [1], Illumina [2]

Mature ame-miR-3477-3p

• Accession: MIMAT0053101
• Description: Apis mellifera ame-miR-3477-3p mature miRNA
• Sequence: 63 - CAUAUUACCUCGUGGGGUUUCC - 84
• Evidence: experimental ; SOLID [1], Illumina [2]

References

1. PubMed ID: 20807255
   Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
   "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
   "Insect Mol Biol (2010) 19:799-805


2. PubMed ID: 22409512
   Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
   "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
   "Genes Brain Behav (2012) 11:660-670