Stem-loop hsa-mir-3180-5

Accession

MI0016409

Symbol

HGNC: MIR3180-5

Description

Homo sapiens hsa-mir-3180-5 precursor miRNA

Gene family

MIPF0000894; mir-3180

Literature search

6 open access papers mention hsa-mir-3180-5
(60 sentences)

Sequence

4113 reads, 103 reads per million, 54 experiments

gcuccgccccacgucgcaugcgccccgggaacgcgUGGGGCGGAGCUUCCGGAGgccccgcccugcugccgacccuguggagcggagggugaagccuccggaugccagucccucaucgcuggcccggucgcgcuguggcgaagggggcggagc
((((((((((.(((((((.((((.(((((...(((.(((((.(.((.(((((((((..((((((.(((((.((...)).).))))))))))..))))))))).))).)))))....)))...)))))..)))))))))))...))))))))))

Structure

          --a       u    -c     aac   ---U     G A  U         cc      g    - g  c 
gcuccgcccc   cgucgca gcgc  ccggg   gcg    GGGGC G GC UCCGGAGgc  cgcccu cugc c ac  
||||||||||   ||||||| ||||  |||||   |||    ||||| | || |||||||||  |||||| |||| | || c
cgaggcgggg   gcggugu cgcg  ggccc   cgc    cccug c cg aggccuccg  guggga ggcg g ug  
          gaa       -    cu     ggu   uacu     a -  u         aa      -    a g  u 

Annotation confidence Not enough data

Genome context

chr16: 2135977-2136129 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from hsa-mir-3180-5

Disease association

hsa-mir-3180-5 is associated with one or more human diseases in the Human microRNA Disease Database

Mature hsa-miR-3180

• Accession: MIMAT0018178
• Description: Homo sapiens hsa-miR-3180 mature miRNA
• Sequence: 36 - UGGGGCGGAGCUUCCGGAG - 54
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20224791
   Discovery of novel microRNAs in female reproductive tract using next generation sequencing
   Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH
   PLoS One (2010) 5:e9637