miRBase entry: hsa-mir-3909

Stem-loop hsa-mir-3909


Accession
MI0016413
Symbol
HGNC: MIR3909
Description
Homo sapiens hsa-mir-3909 precursor miRNA

Literature search
1 open access papers mention hsa-mir-3909
(1 sentences)

Sequence

1439 reads, 38 reads per million, 95 experiments
gguaugcuguugcgcuguccuuccucuggggagcaggcuccgggggacagggaaaagcacacaaggaacuUGUCCUCUAGGGCCUGCAGUCUcaugggagagugacaugcaccaggacc
(((...(((.((((.((((((((((.(((((.((((((((.((((((((((.................)))))))))).))))))))..))))).)))).)).)))))))).))).)))

Structure
   aug   u    c    -  -    c     -a        c          gaaaagc 
ggu   cug ugcg uguc cu uccu ugggg  gcaggcuc gggggacagg       a
|||   ||| |||| |||| || |||| |||||  |||||||| ||||||||||       c
cca   gac acgu acag ga aggg acUCU  CGUCCGGG UCUCCUGUuc       a
   --g   c    -    u  g    u     GA        A          aaggaac 


Annotation confidence Not enough data
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Genome context
chr22: 35335640-35335758 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from hsa-mir-3909
Name Accession Chromosome Start End Strand Confidence




Disease association
hsa-mir-3909 is associated with one or more human diseases in the Human microRNA Disease Database
Disease Description Category PubMed ID


Database links

Mature hsa-miR-3909

Accession MIMAT0018183
Description Homo sapiens hsa-miR-3909 mature miRNA
Sequence 71 - UGUCCUCUAGGGCCUGCAGUCU - 92
Evidence experimental
Illumina [1-2]
Database links
Predicted targets

References

  1. PubMed ID: 20224791
    Discovery of novel microRNAs in female reproductive tract using next generation sequencing
    Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH
    PLoS One (2010) 5:e9637

  2. PubMed ID: 20498841
    Deep sequencing of human nuclear and cytoplasmic small RNAs reveals an unexpectedly complex subcellular distribution of miRNAs and tRNA 3' trailers
    Liao JY, Ma LM, Guo YH, Zhang YC, Zhou H, Shao P, Chen YQ, Qu LH
    PLoS One (2010) 5:e10563