Stem-loop far-MIR1122

Accession

MI0016607

Description

Festuca arundinacea far-MIR1122 precursor miRNA

Sequence

ucuaaagaaguuauucgcuacaaguuaacaagaugaccgggcauuguacacucaaugaccucacaauaagcaccauuucaucaaaaaauuacuacuaccuccgucuaaaaauaagugucuuaguuuugucuagauucagauguaucuaaacauauuuuaguugUAGAUACAUCCGUAUCUAGAaaaaguugagacacuuauuuuuguacggagggaguagaauauuuguuaugaaacccaggacaugaguuguuaucauacaaucuugugguacaugaagagauaacaaaacgaagaagu
.........((((((.((((((((.......((((((.((((((((......))))).)))..............((((((..(((.(((.(((((.(((((((.((((((((((((((((((((((.(((((((.(.(((((((((((((........))).)))))))))).).))))))).)))))))))))))))))))))).))))))).)))))))).)))...)))))).....(((....))))))))).......)))))))).........)))))).............

Structure

----ucuaaagaa      --------c        uuaacaa      cgggcauuguacacucaaugaccucacaauaagcacca      -ca   a   a     a       c                      g       u a          -   aua 
             guuauu         gcuacaag       gaugac                                      uuucau   aaa auu cuacu ccuccgu uaaaaauaagugucuuaguuuu ucuagau c gauguaucua aac   u
             ||||||         ||||||||       ||||||                                      ||||||   ||| ||| ||||| ||||||| |||||||||||||||||||||| ||||||| | |||||||||| |||    
             caauag         ugguguuc       cuauug                                      aaagua   uuu uaa gauga ggaggca guuuuuauucacagaguugaaa AGAUCUA G CUACAUAGAU uug   u
ugaagaagcaaaa      agaaguaca        uaacaua      -----------------------uugaguacaggaccc      uug   a   -     g       u                      a       U C          g   auu 

Annotation confidence Not enough data

Genome context

Unknown

Mature far-miR1122

• Accession: MIMAT0018366
• Description: Festuca arundinacea far-miR1122 mature miRNA
• Sequence: 164 - UAGAUACAUCCGUAUCUAGA - 183
• Evidence: not_experimental

References

1. PubMed ID: 20213187
   Genome-wide profiling and analysis of Festuca arundinacea miRNAs and transcriptomes in response to foliar glyphosate application
   "Unver T, Bakar M, Shearman RC, Budak H"
   "Mol Genet Genomics (2010) 283:397-413