Stem-loop ssc-mir-149

Accession

MI0016620

Description

Sus scrofa ssc-mir-149 precursor miRNA

Literature search

12 open access papers mention ssc-mir-149
(19 sentences)

Sequence

557753 reads, 489.0 reads per million, 207 experiments

gcccaggcUCUGGCUCCGUGUCUUCACUCCCguguguguccgaggaggGAGGGAGGGACGGGGGCUGUGCUggggc
((((.(((.(.(.((((((.(((((.(((((.(.(.......).).)))))))))).)))))).).).))).))))

Structure

    a   U U G      G     A     g g gu 
gccc ggc C G CUCCGU UCUUC CUCCC u u  g
|||| ||| | | |||||| ||||| ||||| | |  u
cggg UCG G C GGGGCA GGAGG GAGgg g a  c
    g   U U G      G     -     a g gc 

Annotation confidence High

Genome context

chr15: 154447027-154447102 [-]

Mature ssc-miR-149-5p

• Accession: MIMAT0018379
• Description: Sus scrofa ssc-miR-149-5p mature miRNA
• Sequence: 9 - UCUGGCUCCGUGUCUUCACUCCC - 31
• Evidence: experimental ; cloned [1], Illumina [2-3]

Mature ssc-miR-149-3p

• Accession: MIMAT0052664
• Description: Sus scrofa ssc-miR-149-3p mature miRNA
• Sequence: 49 - GAGGGAGGGACGGGGGCUGUGCU - 71
• Evidence: experimental ; cloned [1], Illumina [2-3]

References

1. PubMed ID: 20180025
   Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
   "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
   "Mol Biol Rep (2010) 37:3567-3574


2. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


3. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100