Stem-loop oar-mir-665

Accession

MI0016913

Description

Ovis aries oar-mir-665 precursor miRNA

Literature search

2 open access papers mention oar-mir-665
(3 sentences)

Sequence

6497 reads, 1040 reads per million, 13 experiments

cuggaggagggucuccuugAGGGGUCUUGGCCUCUGCCCAGgacucuuucaugACCAGUAGGCCGAGGCCCCUCAcaggcggcugcuuacucucc
..(((((((((((.((((((((((((((((((((((..(((((....))).))..))).)))))))))))))))).))).)))).))).))))..

Structure

cu    -   -    u   -                -   CC  -   c 
  ggag gag gguc ccu ugAGGGGUCUUGGCCU CUG  CA Gga u
  |||| ||| |||| ||| |||||||||||||||| |||  || |||  
  ucuc uuc ucgg gga ACUCCCCGGAGCCGGA GAC  gu cuu c
cc    a   g    c   c                U   CA  a   u 

Annotation confidence Not enough data

Genome context

chr18: 64379046-64379140 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from oar-mir-665

Mature oar-miR-665-5p

• Accession: MIMAT0019239
• Description: Ovis aries oar-miR-665-5p mature miRNA
• Sequence: 20 - AGGGGUCUUGGCCUCUGCCCAG - 41
• Evidence: experimental ; Illumina [1]

Mature oar-miR-665-3p

• Accession: MIMAT0019240
• Description: Ovis aries oar-miR-665-3p mature miRNA
• Sequence: 54 - ACCAGUAGGCCGAGGCCCCUCA - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662