Stem-loop oar-mir-668

Accession

MI0016949

Description

Ovis aries oar-mir-668 precursor miRNA

Literature search

3 open access papers mention oar-mir-668
(7 sentences)

Sequence

1886 reads, 4.0 reads per million, 120 experiments

cgggagucaccgcugcuuaggGUAAGUGCGUCUCGGGUGAGCAugcaaugaauugcucgcaUGUCACUCGGCCCACUACCCAagguuguuccaccccuuccuuac
.(((.((....((.((((.(((((.(((.((..(((((((.(((((............)))))))))))))).)))))))).)))).))...)))))........

Structure

-------c   a  cacc  u    a     A   C  CU       G     aauga 
        ggg gu    gc gcuu ggGUA GUG GU  CGGGUGA CAugc     a
        ||| ||    || |||| ||||| ||| ||  ||||||| |||||      
        ccc ca    ug ugga CCCAU CAC CG  GCUCACU GUacg     u
cauuccuu   -  -ccu  u    A     -   C  --       -     cucgu 

Annotation confidence High

Genome context

chr18: 64552683-64552787 [+]

Clustered miRNAs

19 other miRNAs are < 10 kb from oar-mir-668

Mature oar-miR-668-5p

• Accession: MIMAT0019310
• Description: Ovis aries oar-miR-668-5p mature miRNA
• Sequence: 22 - GUAAGUGCGUCUCGGGUGAGCA - 43
• Evidence: experimental ; Illumina [1]

Mature oar-miR-668-3p

• Accession: MIMAT0019311
• Description: Ovis aries oar-miR-668-3p mature miRNA
• Sequence: 62 - UGUCACUCGGCCCACUACCCA - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662