Stem-loop oar-mir-496

Accession

MI0016954

Description

Ovis aries oar-mir-496 precursor miRNA

Literature search

2 open access papers mention oar-mir-496
(2 sentences)

Sequence

495 reads, 112 reads per million, 13 experiments

gacacgucagaagccagcauccGAGUCGGGUACUCGAAUGGAgguuguccaugguguguucauuuuauuuaugaUGAGUAUUACAUGGCCAAUCUccuuucaguacuaaauucuucuug
......................((((..((((((.(((.((((((((.(((((..(((((((((........)))))))))..))))).)))))))).)))))))))..))))......

Structure

gacacgucagaagccagcaucc    CG      C   U        u     gu         uua 
                      GAGU  GGUACU GAA GGAgguug ccaug  guguucauu   u
                      ||||  |||||| ||| |||||||| |||||  |||||||||    
                      cuua  ucauga cuu ccUCUAAC GGUAC  UAUGAGUag   u
----------------guucuu    aa      -   u        C     AU         uau 

Annotation confidence Not enough data

Genome context

chr18: 64557719-64557837 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from oar-mir-496

Mature oar-miR-496-5p

• Accession: MIMAT0019319
• Description: Ovis aries oar-miR-496-5p mature miRNA
• Sequence: 23 - GAGUCGGGUACUCGAAUGGA - 42
• Evidence: experimental ; Illumina [1]

Mature oar-miR-496-3p

• Accession: MIMAT0019320
• Description: Ovis aries oar-miR-496-3p mature miRNA
• Sequence: 75 - UGAGUAUUACAUGGCCAAUCU - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662