Stem-loop oar-mir-410

Accession

MI0016961

Description

Ovis aries oar-mir-410 precursor miRNA

Literature search

4 open access papers mention oar-mir-410
(15 sentences)

Sequence

91168 reads, 129.0 reads per million, 143 experiments

caccugcggucuguggaguaggcgccacuuuggguacuugaggagAGGUUGUCUGUGAUGAGUUCGcuuuauuaaugacgAAUAUAACACAGAUGGCCUGUuuucaguaccacccaccccucgugc
.....((((...((((.((.............((((((.(((((.((((((((((((.((.((((((.........).))))).)).)))))))))))).)))))))))))))))))...))))..

Structure

caccu    ucu    a  aggcgccacuuug      u     g            A  A     - uuu 
     gcgg   gugg gu             gguacu gagga AGGUUGUCUGUG UG GUUCG c   a
     ||||   |||| ||             |||||| ||||| |||||||||||| || ||||| |   u
     ugcu   cacc ca             ccauga cuuuU UCCGGUAGACAC AU UAAgc g   u
---cg    ccc    -  -------------      -     G            A  A     a uaa 

Annotation confidence High

Genome context

chr18: 64562773-64562898 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from oar-mir-410

Mature oar-miR-410-5p

• Accession: MIMAT0019333
• Description: Ovis aries oar-miR-410-5p mature miRNA
• Sequence: 46 - AGGUUGUCUGUGAUGAGUUCG - 66
• Evidence: experimental ; Illumina [1]

Mature oar-miR-410-3p

• Accession: MIMAT0019334
• Description: Ovis aries oar-miR-410-3p mature miRNA
• Sequence: 81 - AAUAUAACACAGAUGGCCUGU - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20944086
   Assessing the effect of the CLPG mutation on the microRNA catalog of skeletal muscle using high-throughput sequencing
   "Caiment F, Charlier C, Hadfield T, Cockett N, Georges M, Baurain D"
   "Genome Res (2010) 20:1651-1662