miRBase entry: pma-mir-23b

Stem-loop pma-mir-23b

Accession

MI0017027

Description

Petromyzon marinus pma-mir-23b precursor miRNA

Sequence

cgagggccggaggguuccuggcaaggugauuugcgacugcguuucuaagaaaaAUCACAUUGCCAGGGAUUACCACuggcccucg
((((((((((.(((((((((((((.((((((((((....))).........))))))).)))))))))))..)).))))))))))

Structure

          a  --           g       ---------   a 
cgagggccgg gg  guuccuggcaa gugauuu         gcg c
|||||||||| ||  ||||||||||| |||||||         |||  
gcucccgguC CC  UAGGGACCGUU CACUAaa         ugc u
          A  AU           A       aagaaucuu   g

Annotation confidence Not enough data

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Genome context

GL477371.1: 167592-167676 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pma-mir-23b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pma-miR-23b

Accession	MIMAT0019404
Description	Petromyzon marinus pma-miR-23b mature miRNA
Sequence	54 - AUCACAUUGCCAGGGAUUACCAC - 76
Evidence	experimental 454 [1]

References

PubMed ID: 20959416
microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
"Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
"Proc Natl Acad Sci U S A (2010) 107:19379-19383