Stem-loop pma-mir-125

Accession

MI0017058

Description

Petromyzon marinus pma-mir-125 precursor miRNA

Sequence

cgagccuuuugcgcgaUCCCUGAGACCCUAACUUGUGAguugguugcccugucACUGGUUAGGCUCUUGGGAACcgugcagaauggcaaa
...((((((((((((.((((.((((.(((((((.((((...((....))..)))).))))))).))))))))..))))))))).)))...

Structure

cga   -         -a    U    C       U    guu  u 
   gcc uuuugcgcg  UCCC GAGA CCUAACU GUGA   gg u
   ||| |||||||||  |||| |||| ||||||| ||||   ||  
   cgg aagacgugc  AGGG UUCU GGAUUGG CAcu   cc g
aaa   u         CA    -    C       U    -gu  c 

Annotation confidence Not enough data

Genome context

GL476441.1: 175523-175612 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pma-mir-125

Mature pma-miR-125-5p

• Accession: MIMAT0019446
• Description: Petromyzon marinus pma-miR-125-5p mature miRNA
• Sequence: 17 - UCCCUGAGACCCUAACUUGUGA - 38
• Evidence: experimental ; 454 [1]

Mature pma-miR-125-3p

• Accession: MIMAT0019447
• Description: Petromyzon marinus pma-miR-125-3p mature miRNA
• Sequence: 54 - ACUGGUUAGGCUCUUGGGAAC - 74
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 20959416
   microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
   "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
   "Proc Natl Acad Sci U S A (2010) 107:19379-19383