Stem-loop pma-mir-200b

Accession

MI0017103

Description

Petromyzon marinus pma-mir-200b precursor miRNA

Sequence

ggagcugcugcCAUCUUACCUGGUGGUAUUGGGucaaacugaauucUAAUACUGCCUGGUAAUGAUGGUggccgccca
((.((.((((((((((((((.(((((((((((((((...)))..)))))))))))).))))).))))))))).)))).

Structure

-  a  u         -     U            --   a 
 gg gc gcugcCAUC UUACC GGUGGUAUUGGG  uca  
 || || ||||||||| ||||| ||||||||||||  ||| a
 cc cg cggUGGUAG AAUGG CCGUCAUAAUcu  agu  
a  -  c         U     U            ua   c 

Annotation confidence Low

Genome context

Unknown

Mature pma-miR-200b-5p

• Accession: MIMAT0019509
• Description: Petromyzon marinus pma-miR-200b-5p mature miRNA
• Sequence: 12 - CAUCUUACCUGGUGGUAUUGGG - 33
• Evidence: experimental ; 454 [1]

Mature pma-miR-200b-3p

• Accession: MIMAT0019510
• Description: Petromyzon marinus pma-miR-200b-3p mature miRNA
• Sequence: 47 - UAAUACUGCCUGGUAAUGAUGGU - 69
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 20959416
   microRNAs reveal the interrelationships of hagfish, lampreys, and gnathostomes and the nature of the ancestral vertebrate
   "Heimberg AM, Cowper-Sal-lari R, Semon M, Donoghue PC, Peterson KJ"
   "Proc Natl Acad Sci U S A (2010) 107:19379-19383