Stem-loop dme-mir-4949

Accession

MI0017735

Description

Drosophila melanogaster dme-mir-4949 precursor miRNA

Sequence

84 reads, 46 reads per million, 31 experiments

auaaugcgccgccaucuugCGGCACACUCGCACACACACAcgugugccauucugguuuugcAGUGGUGUGCGUGUGUGCCUCGagucguugcgucacug
.....((((.((...((((.(((((((.(((((((.(((......((((...))))......)))))))))).))))))).))))..)).)))).....

Structure

auaau    c  cau    C       U       A   Acgugu    u 
     gcgc gc   cuug GGCACAC CGCACAC CAC      gcca  
     |||| ||   |||| ||||||| ||||||| |||      |||| u
     ugcg ug   gaGC CCGUGUG GCGUGUG GUG      uggu  
gucac    u  -cu    U       U       -   Acguuu    c 

Annotation confidence High

Genome context

chr3R: 31219274-31219372 [-]

Mature dme-miR-4949-5p

• Accession: MIMAT0020160
• Description: Drosophila melanogaster dme-miR-4949-5p mature miRNA
• Sequence: 20 - CGGCACACUCGCACACACACA - 40
• Evidence: experimental ; Illumina [1]

Mature dme-miR-4949-3p

• Accession: MIMAT0020161
• Description: Drosophila melanogaster dme-miR-4949-3p mature miRNA
• Sequence: 62 - AGUGGUGUGCGUGUGUGCCUCG - 83
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21177969
   Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
   "Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC"
   "Genome Res (2011) 21:203-215