Stem-loop dme-mir-4962

Accession

MI0017748

Description

Drosophila melanogaster dme-mir-4962 precursor miRNA

Sequence

81 reads, 15 reads per million, 20 experiments

uccuuucuuuucucuccgucucucucUUUCCCUCUCUCUGUUUACAUUGAgcuguuuuguccgugcacgugcuaGACGAUGUAGAGAGUGAGGGAGAgagcgaauagaauaacagcucauugug
....................((.(((((((((((.((((..((((((((((((((...........))).)))...)))))))))))).))))))))))).)).....................

Structure

-uccuuucuuuucucuccguc  u           U    GU        ---   -   uuug 
                     uc cucUUUCCCUC CUCU  UUACAUUG   Agc ugu    u
                     || ||||||||||| ||||  ||||||||   ||| |||    c
                     ag gagAGAGGGAG GAGA  GAUGUAGC   ucg gca    c
guguuacucgacaauaagaua  c           U    --        AGa   u   cgug 

Annotation confidence Not enough data

Genome context

chrX: 3777382-3777505 [+]

Mature dme-miR-4962-5p

• Accession: MIMAT0020183
• Description: Drosophila melanogaster dme-miR-4962-5p mature miRNA
• Sequence: 27 - UUUCCCUCUCUCUGUUUACAUUGA - 50
• Evidence: experimental ; Illumina [1]

Mature dme-miR-4962-3p

• Accession: MIMAT0020184
• Description: Drosophila melanogaster dme-miR-4962-3p mature miRNA
• Sequence: 75 - GACGAUGUAGAGAGUGAGGGAGA - 97
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21177969
   Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
   "Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC"
   "Genome Res (2011) 21:203-215