Stem-loop dme-mir-4963

Accession

MI0017749

Description

Drosophila melanogaster dme-mir-4963 precursor miRNA

Literature search

1 open access papers mention dme-mir-4963
(1 sentences)

Sequence

50 reads, 5 reads per million, 26 experiments

cuguaggaaauuuuuugggguacuucuGGUUUCAUAACGCAGAGAAUCaucagcgugaaggaaugAUUCUCUGCGGGCUGGAACCAGaaguccugcaaauguucuuuua
....(((((....((((.((.(((((((((((((...(((((((((((((...(......).)))))))))))))...))))))))))))).)).))))..)))))...

Structure

cugu     auuu    g  u             UAA             cag gu 
    aggaa    uuug gg acuucuGGUUUCA   CGCAGAGAAUCau   c  g
    |||||    |||| || |||||||||||||   |||||||||||||   |   
    uucuu    aaac uc ugaaGACCAAGGU   GCGUCUCUUAgua   g  a
-auu     --gu    g  c             CGG             --a ga 

Annotation confidence Not enough data

Genome context

chrX: 5790753-5790861 [+]

Mature dme-miR-4963-5p

• Accession: MIMAT0020185
• Description: Drosophila melanogaster dme-miR-4963-5p mature miRNA
• Sequence: 28 - GGUUUCAUAACGCAGAGAAUC - 48
• Evidence: experimental ; Illumina [1]

Mature dme-miR-4963-3p

• Accession: MIMAT0020186
• Description: Drosophila melanogaster dme-miR-4963-3p mature miRNA
• Sequence: 66 - AUUCUCUGCGGGCUGGAACCAG - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21177969
   Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
   "Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC"
   "Genome Res (2011) 21:203-215