Stem-loop dme-mir-4966

Accession

MI0017752

Description

Drosophila melanogaster dme-mir-4966 precursor miRNA

Literature search

1 open access papers mention dme-mir-4966
(1 sentences)

Sequence

405 reads, 247 reads per million, 18 experiments

gcugugugacaacaaacuugucggcacuggagUACUAAAUAUAUUGCACAUGUUcaugcaUGUUCAACAUAUUUAGCACUCAaguaccgaaaaaugaacaacgaaacgaaaaauaacacgaacauca
..((((((((((.....)))))((.(((.((((.((((((((.(((.((((((....)))))).))).)))))))).)))).))).))...........................))))).......

Structure

-----gc     ------------gacaacaaacuuguc  c   g    A        A   C      U 
       ugugu                           gg acu gagU CUAAAUAU UUG ACAUGU c
       |||||                           || ||| |||| |||||||| ||| ||||||  
       gcaca                           cc uga CUCA GAUUUAUA AAC UGUacg a
acuacaa     auaaaaagcaaagcaacaaguaaaaag  a   A    C        C   U      u 

Annotation confidence High

Genome context

chrX: 19558370-19558496 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from dme-mir-4966

Mature dme-miR-4966-5p

• Accession: MIMAT0020190
• Description: Drosophila melanogaster dme-miR-4966-5p mature miRNA
• Sequence: 33 - UACUAAAUAUAUUGCACAUGUU - 54
• Evidence: experimental ; Illumina [1]

Mature dme-miR-4966-3p

• Accession: MIMAT0020191
• Description: Drosophila melanogaster dme-miR-4966-3p mature miRNA
• Sequence: 61 - UGUUCAACAUAUUUAGCACUCA - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21177969
   Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
   "Berezikov E, Robine N, Samsonova A, Westholm JO, Naqvi A, Hung JH, Okamura K, Dai Q, Bortolamiol-Becet D, Martin R, Zhao Y, Zamore PD, Hannon GJ, Marra MA, Weng Z, Perrimon N, Lai EC"
   "Genome Res (2011) 21:203-215