Stem-loop ssc-let-7a-2

Accession

MI0017984

Description

Sus scrofa ssc-let-7a-2 precursor miRNA

Literature search

50 open access papers mention ssc-let-7a-2
(153 sentences)

Sequence

131110296 reads, 60455.0 reads per million, 214 experiments

cacugugggaUGAGGUAGUAGGUUGUAUAGUUuuagggucacacccaccacugggagauaaCUAUACAAUCUACUGUCUUUCcuaacgugau
(((..(((((.(((((((((((((((((((((.....(((...((((....)))).)))))))))))))))))))))))))))))..)))..

Structure

--   ug     U                     uuagg   aca    c 
  cac  uggga GAGGUAGUAGGUUGUAUAGUU     guc   ccca c
  |||  ||||| |||||||||||||||||||||     |||   ||||  
  gug  aucCU UUCUGUCAUCUAACAUAUCaa     uag   gggu a
ua   ca     -                     -----   --a    c 

Annotation confidence High

Genome context

chr3: 44864433-44864524 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ssc-let-7a-2

Mature ssc-let-7a-5p

• Accession: MIMAT0013865
• Description: Sus scrofa ssc-let-7a-5p mature miRNA
• Sequence: 11 - UGAGGUAGUAGGUUGUAUAGUU - 32
• Evidence: experimental ; Illumina [1-2]

Mature ssc-let-7a-2-3p

• Accession: MIMAT0052607
• Description: Sus scrofa ssc-let-7a-2-3p mature miRNA
• Sequence: 62 - CUAUACAAUCUACUGUCUUUC - 82
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


2. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100