Stem-loop ssc-mir-486-2

Accession

MI0017992

Description

Sus scrofa ssc-mir-486-2 precursor miRNA

Literature search

12 open access papers mention ssc-mir-486-2
(26 sentences)

Sequence

1045280 reads, 6989.0 reads per million, 211 experiments

cccugacgggUCCUGUACUGAGCUGCCCCGAGgcccucacugugcccagcuCGGGCCAGCUCAGUACCCGGCGcgucggggu
((((((((.(((..(((((((((((.((((((((.(.....).)))....))))).)))))))))))..))).)))))))).

Structure

-        g   CU           C     ----   c u 
 cccugacg gUC  GUACUGAGCUG CCCGA    Ggc c c
 |||||||| |||  ||||||||||| |||||    ||| | a
 ggggcugc CGG  CAUGACUCGAC GGGCu    ccg g c
u        G   CC           C     cgac   u u 

Annotation confidence High

Genome context

chrUScaf2610: 3466-3547 [-]

Mature ssc-miR-486-2-5p

• Accession: MIMAT0052617
• Description: Sus scrofa ssc-miR-486-2-5p mature miRNA
• Sequence: 11 - UCCUGUACUGAGCUGCCCCGAG - 32
• Evidence: experimental ; Illumina [1-2]

Mature ssc-miR-486-2-3p

• Accession: MIMAT0052673
• Description: Sus scrofa ssc-miR-486-2-3p mature miRNA
• Sequence: 52 - CGGGCCAGCUCAGUACCCGGCG - 73
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21312241
   MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
   "Li G, Li Y, Li X, Ning X, Li M, Yang G"
   "J Cell Biochem (2011) 112:1318-1328


2. PubMed ID: 24499489
   Exploration of microRNAs in porcine milk exosomes
   Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
   BMC Genomics (2014) 15:100