Stem-loop osa-MIR5148c

Accession

MI0018063

Description

Oryza sativa osa-MIR5148c precursor miRNA

Sequence

15990 reads, 58.0 reads per million, 141 experiments

cacgauaugacguuuguaccccucacaaguacAAGUAUAAUGCAUGUCAAUGAGGGGUAGAAAUGUCAUAUCAUgugug
(((((((((((((((.(((((((((...(.(((.(((...))).))))..))))))))).))))))))))))..)))..

Structure

--   --            g         caa u   A   U 
  cac  gauaugacguuu uaccccuca   g acA GUA  
  |||  |||||||||||| |||||||||   | ||| ||| A
  gug  CUAUACUGUAAA AUGGGGAGU   C UGU CGU  
gu   UA            G         -AA -   A   A 

Annotation confidence Low

Genome context

11: 2813203-2813281 [-]

Mature osa-miR5148c-5p

• Accession: MIMAT0056184
• Description: Oryza sativa osa-miR5148c-5p mature miRNA
• Sequence: 33 - AAGUAUAAUGCAUGUCAAUGAGGG - 56
• Evidence: experimental ; unknown

Mature osa-miR5148c-3p

• Accession: MIMAT0021096
• Description: Oryza sativa osa-miR5148c-3p mature miRNA
• Sequence: 51 - UGAGGGGUAGAAAUGUCAUAUCAU - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21525786
   Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus
   "Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D"
   "RNA Biol (2011) 8:538-547