Stem-loop bdi-MIR5175a

Accession

MI0018144

Description

Brachypodium distachyon bdi-MIR5175a precursor miRNA

Literature search

2 open access papers mention bdi-MIR5175a
(2 sentences)

Sequence

5124 reads, 51.0 reads per million, 21 experiments

gacuguggccacccauuaccauaaguacuucuucuguuccuaaauucuuaccgcuguuUUAGUUCAAAUUUGUACUaaaacaacgauAAGAAUUUAGGAACGGAGGGAauacuuucauaauuuaucuugcucuccau
...(((((..........)))))((((.((((((((((((((((((((((.((.(((((((((.((....)).))))))))).)).)))))))))))))))))))))).))))........................

Structure

-gacuguggccacccauuaccaua    c                      c  c         U  A 
                        agua uucuucuguuccuaaauucuua cg uguuUUAGU CA A
                        |||| |||||||||||||||||||||| || ||||||||| ||  
                        ucau AGGGAGGCAAGGAUUUAAGAAu gc acaaaaUCA GU U
uaccucucguucuauuuaauacuu    a                      a  a         U  U 

Annotation confidence Low

Genome context

1: 15325058-15325194 [+]

Mature bdi-miR5175a-5p

• Accession: MIMAT0057011
• Description: Brachypodium distachyon bdi-miR5175a-5p mature miRNA
• Sequence: 59 - UUAGUUCAAAUUUGUACU - 76
• Evidence: experimental ; unknown

Mature bdi-miR5175a-3p

• Accession: MIMAT0020719
• Description: Brachypodium distachyon bdi-miR5175a-3p mature miRNA
• Sequence: 88 - AAGAAUUUAGGAACGGAGGGA - 108
• Evidence: not_experimental

References

1. PubMed ID: 21371551
   Implementation of a de novo genome-wide computational approach for updating Brachypodium miRNAs
   "Baev V, Milev I, Naydenov M, Apostolova E, Minkov G, Minkov I, Yahubyan G"
   "Genomics (2011) 97:282-293